Changes in version 2.0.4 (2026-02-22)                  

  - Fix Bonferroni correction in the mvMAPIT.Rmd vignette.
  - New function binary_to_liability for LT-MAPIT support and
    corresponding vignette
  - Fix CRAN Notes - dependency compatibility.
  - Performance improvements in C++ implementation:
      - Eliminated redundant matrix inverse computation in projection
        operations
      - Optimized triple matrix products in Q matrix computation
      - Added benchmark suite for tracking performance improvements
      - Typical speedup: 3-8% depending on problem size and test method

                 Changes in version 2.0.3 (2023-09-26)                  

  - Fix LTO issues again. The R dev automation generates RcppExport.cpp
    files that cause LTO issues in this package on CRAN.

                 Changes in version 2.0.2 (2023-09-22)                  

  - Added Cauchy combination test cauchy_combined including vignette
    that compares combination methods
  - simulate_traits now returns genotype matrix with causal epistatic
    variants named according to the trait they affect
  - Added progress bar and possibility to interrupt C++ routine using
    RcppProgress
  - Fixed "incorrect number of dimensions" error in simulate_data.R

                 Changes in version 2.0.1 (2023-02-09)                  

  - Fix LTO issues when submitting to CRAN. The testthat issue
    https://github.com/r-lib/testthat/issues/1230 describes the solution
    chosen. Created this GitHub gist to reproduce LTO errors:
    https://gist.github.com/jdstamp/056475683110aacdb1e6761872ab1e05.

                       Changes in version 2.0.0.1                       

  - CRAN issue does not show up in R CMD check. Version upgrade for
    resubmission.

                 Changes in version 2.0.0 (2022-12-05)                  

  - fishers_combined and harmonic_combined now take additional arguments
    in form of string values. The first determines the name of the
    column of the tibble by which to group the p-values. The second
    determines the name of the column containing the p-values.
  - Added Dockerfile and vignette on mvMAPIT in Docker.
  - MvMAPIT was renamed to mvmapit.
  - simulate_phenotypes was renamed to simulate_traits.
  - Dependencies were cleaned up, e.g. R requirement 2.10 -> 3.5, old
    package dependencies removed.

                        Changes in version 1.1.1                        

  - Version that publication data was produced with. No official
    release.