Package: smer
Title: Sparse Marginal Epistasis Test
Version: 0.0.2
URL: https://github.com/lcrawlab/sme, https://lcrawlab.github.io/sme/
BugReports: https://github.com/lcrawlab/sme/issues
Authors@R: c(
    person("Julian", "Stamp", email = "julian.d.stamp@gmail.com",
    role = c("cre", "aut"), comment = c(ORCID = "0000-0003-3014-6249")),
    person("Lorin", "Crawford", email = "lcrawford@microsoft.com",
    role = "aut", comment = c(ORCID = "0000-0003-0178-8242")),
    person("sriramlab", role = "cph", comment = "Author of included mailman algorithm"))
Description: The Sparse Marginal Epistasis Test is a computationally
        efficient genetics method which detects statistical epistasis
        in complex traits; see Stamp et al. (2025,
        <doi:10.1101/2025.01.11.632557>) for details.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo: BH, HighFive, Rcpp, RcppEigen, Rhdf5lib, testthat
Imports: dplyr, genio, logging, mvMAPIT, Rcpp, tidyr
Suggests: GenomicRanges, ggplot2, knitr, rmarkdown, testthat (>=
        3.0.0), xml2
Config/testthat/edition: 3
SystemRequirements: GNU make
VignetteBuilder: knitr
Depends: R (>= 4.4.0)
LazyData: true
biocViews: GenomeWideAssociation, Epistasis, Genetics, SNP,
        LinearMixedModel
Config/pak/sysreqs: cmake make libhdf5-dev libicu-dev libuv1-dev
        libx11-dev
Repository: https://lcrawlab.r-universe.dev
Date/Publication: 2025-08-22 12:21:49 UTC
RemoteUrl: https://github.com/lcrawlab/sme
RemoteRef: HEAD
RemoteSha: 647209cd6252405f31419118bb1203332d900d1e
NeedsCompilation: yes
Packaged: 2026-06-20 10:27:19 UTC; root
Author: Julian Stamp [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-3014-6249>),
  Lorin Crawford [aut] (ORCID: <https://orcid.org/0000-0003-0178-8242>),
  sriramlab [cph] (Author of included mailman algorithm)
Maintainer: Julian Stamp <julian.d.stamp@gmail.com>